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Mice, Acorns, and Lyme Disease: a Case Study to Teach the Ecology of Emerging Infectious Diseases.Learning ObjectivesStudents will be able to...
- outline the life cycle of ticks and explain the transmission cycle of Lyme disease.
- describe factors that make mice a competent reservoir for Borrelia burgdorferi.
- analyze and interpret line and bar graphs of data on the effects of changes to ecological communities on the risk of human exposure to Lyme disease.
- explain how the incidence of Lyme disease is determined by interactions between bacteria, animals, humans and the environment.
- predict how changes in the ecosystem affect Borrelia burgdorferi transmission.
- explain how human activities affect biodiversity and the consequences of those actions on disease outbreaks.
Out of Your Seat and on Your Feet! An adaptable course-based research project in plant ecology for advanced studentsLearning ObjectivesStudents will:
- Articulate testable hypotheses. (Lab 8, final presentation/paper, in-class exercises)
- Analyze data to determine the level of support for articulated hypotheses. (Labs 4-7, final presentation/paper)
- Identify multiple species of plants in the field quickly and accurately. (Labs 2-3, field trip)
- Measure environmental variables and sample vegetation in the field. (Labs 2-3, field trip)
- Analyze soil samples using a variety of low-tech lab techniques. (Open labs after field trip)
- Use multiple statistical techniques to analyze data for patterns. (Labs 4-8, final presentation/paper)
- Interpret statistical analyses to distinguish between strong and weak interactions in a biological system. (Labs 4-7, final presentation/paper)
- Develop and present a conference-style presentation in a public forum. (Lab 8, final presentation/paper)
- Write a publication-ready research paper communicating findings and displaying data. (Lab 8, final presentation/paper)
Using a Sequential Interpretation of Data in Envelopes (SIDE) approach to identify a mystery TRP channelLearning Objectives
- Students will be able to analyze data from multiple experimental methodologies to determine the identity of their "mystery" TRP channel.
- Students will be able to interpret the results of individual experiments and from multiple experiments simultaneously to identify their "mystery" TRP channel.
- Students will be able to evaluate the advantages and limitations of experimental methodologies presented in this lesson.
Casting a Wide Net via Case Studies: Educating across the undergraduate to medical school continuum in the biological...Learning ObjectivesAt the end of this lesson, the student should be able to:
- Consider the potential advantages and disadvantages of widespread use of whole genome sequencing and direct-to-consumer genetic testing.
- Explore the critical need to maintain privacy of individual genetic test results to protect patient interests.
- Dissect the nuances of reporting whole genome sequencing results.
- Recognize the economic ramifications of precision medicine strategies.
- Formulate a deeper understanding of the ethical dimensions of emerging genetic testing technologies.
Investigating Cell Signaling with Gene Expression DatasetsLearning ObjectivesStudents will be able to:
- Explain the hierarchical organization of signal transduction pathways.
- Explain the role of enzymes in signal propagation and amplification.
- Recognize the centrality of signaling pathways in cellular processes, such as metabolism, cell division, or cell motility.
- Rationalize the etiologic basis of disease in terms of deranged signaling pathways.
- Use software to analyze and interpret gene expression data.
- Use an appropriate statistical method for hypotheses testing.
- Produce reports that are written in scientific style.
The impact of diet and antibiotics on the gut microbiomeLearning ObjectivesAfter completing the exercise, students will be able to:
- Identify several of the nine phyla that contribute to the gut microbiome and name the two predominant ones;
- Describe how diet impacts the gut microbiome and compare the composition of the gut microbiome between different diets;
- Describe how antibiotic treatment impacts the gut microbiome and understand how this leads to infection, for example by Clostridium difficile;
- Trace the response to a change in diet, starting with i) changes in the composition of the microbiome, followed by ii) changes in the bacterial metabolic pathways and the respective excreted metabolic products, resulting in iii) a molecular response in the host intestinal cells, and eventually iv) resulting in human disease;
- Improve their ability to read scientific literature;
- Express themselves orally and in writing;
- Develop team working skill
Bad Science: Exploring the unethical research behind a putative memory supplementLearning ObjectivesStudents will be able to:
- create criteria for evaluating information that is touted as scientific.
- apply those criteria to evaluate the claim that Prevagen® enhances memory.
- identify the misleading tactics used on the Prevagen® website and in their self-published reporting.
- decide whether to recommend taking Prevagen® and explain their decisions.
Plotting Cranial and Spinal Nerve Pathways in a Human Anatomy LabLearning Objectives
- Identify and describe the functions of cranial and spinal nerves
- Identify cranial and spinal nerve origination points and what structures they innervate
- Trace the routes that cranial and spinal nerves take throughout the body
Building a Model of Tumorigenesis: A small group activity for a cancer biology/cell biology courseLearning ObjectivesAt the end of the activity, students will be able to:
- Analyze data from a retrospective clinical study uncovering genetic alterations in colorectal cancer.
- Draw conclusions about human tumorigenesis using data from a retrospective clinical study.
- Present scientific data in an appropriate and accurate way.
- Discuss why modeling is an important practice of science.
- Create a simple model of the genetic changes associated with a particular human cancer.
A first lesson in mathematical modeling for biologists: RocsLearning Objectives
- Systematically develop a functioning, discrete, single-species model of an exponentially-growing or -declining population.
- Use the model to recommend appropriate action for population management.
- Communicate model output and recommendations to non-expert audiences.
- Generate a collaborative work product that most individuals could not generate on their own, given time and resource constraints.
Using Pathway Maps to Link Concepts, Peer Review, Primary Literature Searches and Data Assessment in Large Enrollment...Learning Objectives
- Define basic concepts and terminology of Ecosystem Ecology
- Link biological processes that affect each other
- Evaluate whether the link causes a positive, negative, or neutral effect
- Find primary literature
- Identify data that correctly supports or refutes an hypothesis
Using Structured Decision Making to Explore Complex Environmental IssuesLearning ObjectivesStudents will be able to:
- Describe the process, challenges, and benefits of structured decision making for natural resource management decisions.
- Explain and reflect on the role of science and scientists in structured decision making and how those roles interact and compare to the roles of other stakeholders.
- Assess scientific evidence for a given management or policy action to resolve an environmental issue.
Investigating the Function of a Transport Protein: Where is ABCB6 Located in Human Cells?Learning ObjectivesAt the end of this activity students will be able to:
- describe the use of two common research techniques for studying proteins: SDS-PAGE and immunoblot analysis.
- determine a protein’s subcellular location based on results from: 1) immunoblotting after differential centrifugation, and 2) immunofluorescence microscopy.
- analyze protein localization data based on the limitations of differential centrifugation and immunofluorescence microscopy.
The Leaky Neuron: Understanding synaptic integration using an analogy involving leaky cupsLearning ObjectivesStudents will able to:
- compare and contrast spatial and temporal summation in terms of the number of presynaptic events and the timing of these events
- predict the relative contribution to reaching threshold and firing an action potential as a function of distance from the axon hillock
- predict how the frequency of incoming presynaptic action potentials effects the success of temporal summation of resultant postsynaptic potentials
Follow the Sulfur: Using Yeast Mutants to Study a Metabolic PathwayLearning ObjectivesAt the end of this lesson, students will be able to:
- use spot plating techniques to compare the growth of yeast strains on solid culture media.
- predict the ability of specific met deletion strains to grow on media containing various sulfur sources.
- predict how mutations in specific genes will affect the concentrations of metabolites in the pathways involved in methionine biosynthesis.
Evaluating the Quick Fix: Weight Loss Drugs and Cellular RespirationLearning Objectives
- Students will be able to explain how the energy from sugars is transformed into ATP via cellular respiration.
- Students will be able to predict an outcome if there is a perturbation in the cellular respiration pathway.
- Students will be able to state and evaluate a hypothesis.
- Students will be able to interpret data from a graph, and use that data to make inferences about the action of a drug.
Using CRISPR-Cas9 to teach the fundamentals of molecular biology and experimental designLearning ObjectivesModule 1
- Generate a testable hypothesis that requires a creative design of reagents based on critical reading of and review of prior research.
- Demonstrate proficiency in using molecular cloning software to analyze, manipulate and verify DNA sequences.
- Predict the downstream effect on the mRNA and protein after successfully inserting a DNA repair template into the genome of a cell/organism.
- Compare and contrast the processes of DNA duplication and PCR.
- Demonstrate the ability to design primers to amplify a nucleotide sequence.
- Analyze and evaluate the results of DNA agarose gel electrophoresis.
- Identify the key features in genomic DNA, specifically those required for CRISPR-Cas9 mediated gene edits.
- Explain how compatible ends of DNA are used to produce recombinant DNA in a ligation reaction.
- Explain the chemical principles behind plasmid DNA purification from bacterial cultures.
- Devise a strategy to screen clones based on antibiotic selection and the mechanism of digestion by DNA endonucleases.
- Predict and evaluate the results of a diagnostic digest.
- Explain the chemical principles behind DNA purification using phenol-chloroform extraction and ethanol precipitation.
- Explain the key differences between DNA duplication and transcription.
- Demonstrate the ability to perform lab work with sterile technique.
- Compare and contrast the results of a non-denaturing vs. denaturing agarose gel.
- Evaluate the results of a denaturing agarose gel.
- Design and implement an experiment that tests the CRISPR-Cas9 principle.
- Predict the outcome of a successful in vitro Cas9 digest.
- Summarize important background information on gene of interest from analysis of primary literature.
- Produce figures and figure legends that clearly indicate results.
- Organize and construct a poster that clearly and professionally displays the important aspects of the lesson.
- Demonstrate understanding of the lesson by presenting a poster to an audience in lay terms, mid-level terms, or at an expert level.
- Demonstrate understanding of procedures by writing a formal materials and methods paper.
Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics CourseLearning ObjectivesStudents will be able to:
- list and perform the steps of sequence processing and taxonomic inference.
- interpret microbial community diversity from metagenomic sequence datasets.
- compare microbial diversity within and between samples or treatments.
A new approach to course-based research using a hermit crab-hydrozoan symbiosisLearning ObjectivesStudents will be able to:
- define different types of symbiotic interactions, with specific examples.
- summarize and critically evaluate contemporary primary literature relevant to ecological symbioses, in particular that between hermit crabs and Hydractinia spp.
- articulate a question, based on observations of a natural phenomenon (in this example, the hermit crab-Hydractinia interaction).
- articulate a testable hypothesis, based on their own observations and read of the literature.
- design appropriate experimental or observational studies to address their hypotheses.
- collect and interpret data in light of their hypotheses.
- problem-solve and troubleshoot issues that arise during their experiment.
- communicate scientific results, both orally and in written form.
Using Yeast to Make Scientists: A Six-Week Student-Driven Research Project for the Cell Biology LaboratoryLearning Objectives
- Learn about basic S. cerevisiae biology
- Use sterile technique
- Perform a yeast viability assay
- Use a spectrophotometer to measure growth of S. cerevisiae
- Perform a literature search
- Calculate concentrations of chemicals appropriate for S. cerevisiae
- Generate S. cerevisiae growth curves
- Troubleshoot experimental difficulties
- Perform statistical analysis
- Present findings to an audience
Differential Gene Expression during Xenopus laevis DevelopmentLearning ObjectivesStudents will be able to:
- identify different stages of Xenopus development
- contrast the strengths and limitations of the Xenopus model organism
- explain the process and purpose of in situ hybridization
- compare gene expression patterns from different germ layers or organ domains
- compare gene expression patterns from different developmental stages
Cell Signaling Pathways - a Case Study ApproachLearning Objectives
- Use knowledge of positive and negative regulation of signaling pathways to predict the outcome of genetic modifications or pharmaceutical manipulation.
- From phenotypic data, predict whether a mutation is in a coding or a regulatory region of a gene involved in signaling.
- Use data, combined with knowledge of pathways, to make reasonable predictions about the genetic basis of altered signaling pathways.
- Interpret and use pathway diagrams.
- Synthesize information by applying prior knowledge on gene expression when considering congenital syndromes.